Detection of immunoglobulin genes rearrangements in patients with acute lymphoblastic leukemia using highthroughput next generation sequencing
https://doi.org/10.18821/0234-5730-2016-61-4-200-204
Abstract
Monitoring of minimal residual disease (MRD) proved to be a valuable tool for predicting relapse in patients with acute lymphoblastic leukemia (ALL). However, the universal use of MRD monitoring in routine clinical practice is limited because current MRD assays have some methodological difficulties, high price and ambiguity of assay results interpretation. Here we describe next generation sequencing based system for the detection of clonal rearrangements in immunoglobulin genes loci. We performed testing of the system on 17 initial bone marrow samples from B-ALL patients. We revealed 1 to 6 characteristic immunoglobulin genes rearrangements in each of 16 samples. These results are in a good accordance with the results obtained by traditional BIOMED-2 assay. Further improvement of the reported system will provide highly reliable and sensitive technique for MRD monitoring.
Keywords
About the Authors
A. Yu KomkovRussian Federation
Moscow, 117997
A. M. Miroshnichenkova
Russian Federation
Moscow, 117997
Yu. V. Olshanskaya
Russian Federation
Moscow, 117997
N. V. Myakova
Russian Federation
Moscow, 117997
Yu. Yu. Diakonova
Russian Federation
Moscow, 117997
A. A. Minervina
Russian Federation
Moscow, 117997
I. Z. Mamedov
Russian Federation
Moscow, 117997
Yu. B. Lebedev
Russian Federation
Moscow, 117997
A. A. Maschan
Russian Federation
Moscow, 117997
M. A. Maschan
Russian Federation
Maschan Michael A., MD, PhD, deputy-director
Moscow, 117997
References
1. van Dongen J.J., van der Velden V.H., Bruggemann M., Orfao A. Minimal residual disease diagnostics in acute lymphoblastic leukemia: need for sensitive, fast, and standardized technologies. Blood. 2015; 125(26): 3996–4009.
2. van Dongen J.J., Langerak A.W., Bruggemann M., Evans P.A., Hummel M., Lavender F.L., et al. Design and standardization of PCR primers and protocols for detection of clonal immunoglobulin and T-cell receptor gene recombinations in suspect lymphoproliferations: report of the BIOMED-2 Concerted Action BMH4-CT98-3936. Leukemia. 2003; 17(12): 2257–317.
3. Kotrova M., Muzikova K., Mejstrikova E., Novakova M., BakardjievaMihaylova V., Fiser K., et al. The predictive strength of next-generation sequencing MRD detection for relapse compared with current methods in childhood ALL. Blood. 2015; 126(8): 1045–7.
4. Wu D., Sherwood A., Fromm J.R., Winter S.S., Dunsmore K.P., Loh M.L., et al. High-throughput sequencing detects minimal residual disease in acute T lymphoblastic leukemia. Sci. Transl. Med.2012; 4(134): 134ra163. doi: 10.1126/scitranslmed.3003656.
5. Wu J., Jia S., Wang C., Zhang W., Liu S., Zeng X., et al. Minimal Residual Disease Detection and Evolved IGH Clones Analysis in Acute B Lymphoblastic Leukemia Using IGH Deep Sequencing. Front. Immunol. 2016; 7: 403.
6. Topp M.S., Gökbuget N., Zugmaier G., Degenhard E., Goebeler M.E., Klinger M., et al. Long-term follow-up of hematologic relapsefree survival in a phase 2 study of blinatumomab in patients with MRD in B-lineage ALL. Blood. 2012; 120(26): 5185–7. doi: 10.1182/blood-2012-07-441030.
7. Campana D. Minimal residual disease monitoring in childhood acute lymphoblastic leukemia. Curr. Opin. Hematol. 2012; 19(4): 313–8. doi: 10.1097/MOH.0b013e3283543d5c.
8. Clemente M.J., Przychodzen B., Jerez A., Dienes B.E., Afable M.G., Husseinzadeh H., et al. Deep sequencing of the T-cell receptor repertoire in CD8+ T-large granular lymphocyte leukemia identifies signature landscapes. Blood. 2013; 122(25): 4077–85. doi: 10.1182/blood-2013-05-506386.
9. Faham M., Zheng J., Moorhead M., Carlton V. E., Stow P., CoustanSmith E., et al. Deep-sequencing approach for minimal residual disease detection in acute lymphoblastic leukemia. Blood. 2012; 120(26): 5173– 80. doi: 10.1182/blood-2012-07-444042.
10. Ladetto M., Bruggemann M., Monitillo L., Ferrero S., Pepin F., Drandi D., et al. Next-generation sequencing and real-time quantitative PCR for minimal residual disease detection in B-cell disorders. Leukemia. 2014; 28(6): 1299–307.
11. Logan A.C., Vashi N., Faham M., Carlton V., Kong K., Buno I., et al. Immunoglobulin and T cell receptor gene high-throughput sequencing quantifies minimal residual disease in acute lymphoblastic leukemia and predicts post-transplantation relapse and survival. Biol. Blood Marrow Transplant. 2014; 20(9): 1307–13. doi: 10.1016/j.bbmt.2014.04.018.
Review
For citations:
Komkov A.Yu., Miroshnichenkova A.M., Olshanskaya Yu.V., Myakova N.V., Diakonova Yu.Yu., Minervina A.A., Mamedov I.Z., Lebedev Yu.B., Maschan A.A., Maschan M.A. Detection of immunoglobulin genes rearrangements in patients with acute lymphoblastic leukemia using highthroughput next generation sequencing. Russian journal of hematology and transfusiology. 2016;61(4):200-204. (In Russ.) https://doi.org/10.18821/0234-5730-2016-61-4-200-204