A new HLA-A allele, A*24:314, identified in the populations of the North Caucasus
https://doi.org/10.18821/0234-5730-2016-61-2-96-100
Abstract
Sequence based typing was used to identify human leukocyte antigen HLA-A, HLA-B, HLA-C, HLA-DRB1, HLADQB1 alleles from 2444 donors residing in the Chechen Republic and the Republic of Dagestan, Russia, for unrelated hematopoietic stem cell registry. During the performance of the research in the study population there was identified new allele, which was not previously registered on The WHO Nomenclature Committee for Factors of the HLA System. In this population, 51 HLA-A alleles from 19 groups of alleles were detected. Alleles occurred with the frequency more than 10% included HLA-A*02:01 (32.28%), 01:01 (11.54%), 24:02 (10.84%). New identified allele HLA-A*24:314 (0.31%) ranks second in the frequency of alleles among the allelic group A*24, after allele A*24:02.
About the Authors
M. A. LoginovaRussian Federation
Loginova Mariya A., BD, PhD, head of the Department of donor of hematopoietic stem cells “Rosplasma”
Kirov, 610002;
Kirov, 610027
I. V. Paramonov
Russian Federation
Kirov, 610027
Z. M. Tataeva
Russian Federation
Grozny,364037
A. I. Kabardieva
Russian Federation
Makhachkala, 367008
References
1. Nomenclature for Factors of the HLA System. HLA alleles number. 2016. Available at: http://hla.alleles.org/nomenclature/stats.html.
2. Biderman B.V., Jakutik I.A., Hamaganova E.G., Sudarikov A.B., Kuzmina L.A., Parovichnikova E.N., et al. New allele HLA-C812: 138, identifed in patients with chronic myeloid leukemia in the search for an unrelated donor allogeneic transplantation of hematopoietic stem cells. Hematology and Transfusiology. Russian journal (Gematologiya i transfusiologiya). 2015; 60(2): 4–5. (in Russian)
3. Loginova M., Paramonov I. Identifcation of a new HLA-B*27 allele, B*27:133, in a Russian individual. Tissue Antigens. 2015; 86(3): 211–2. doi: 10.1111/tan.12611.
4. The counter register (2016). Available at: http://www.rusfond.ru/registr/009#counter (update 22.01.2016). (in Russian).
5. HARPs Finder (2016). Availbale at: http://www.harpsfnder.conexio-genomics.com/index.html.
6. Excoffer L., Laval G., Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online. 2007; 1: 47–50.
7. Excoffer L., Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 1995; 12(5): 921–7.
8. Sequence Alignment Tool. Available at: http://www.ebi.ac.uk/ipd/imgt/hla/align.html.
9. IMGT/HLA Allele Query Form. Available at: https://www.ebi.ac.uk/ipd/imgt/hla/allele.html.
10. Allele frequency in World population (2016). Available at: http://www.allelefrequencies.net.
11. Bone Marrow Donor Worldwide (2015). Available at: http://www.bmdw.org/index.php?id=home.
12. Boldyreva M.N., Guskova I.A., Bogatova O.V., Jankevich T.E., Hromova N.A., Tegako O.V., et al. HLA-genetic diversity of the population of Russia and the CIS. II. The peoples of the European part. Immunology. Russian journal (Immunologiya). 2006; 4: 198–202. (in Russian).
13. Boldyreva M.N., Gus’kova I.A., Bogatova O.V., Jankevich T.E., Hromova N.A., Kabdulova D.D., et al. HLA-genetic diversity of the population of Russia and the CIS. III. The peoples of Eurasia. Immunology. Russian journal (Immunologiya). 2006; 6: 324–29. (in Russian)
14. Bubnova L.N., Zaitseva G.A., Erokhina L.V., Berkos A.S., Reutova N.V., Belyaeva E.V., et al. A comparative study of HLA-A and HLA-B antigens and haplotype distribution among donors of hematopoietic stem cells from Russia and German regions. Cell. Ther. Transplant. 2008; 1(1): 28–34.
15. Loginova M.A., Trofmova N.P., Paramonov I.V. The genetic characteristics of the population living on the territory of the Kirov region. Journal of the blood service of Russia. Russian journal (Vestnik sluzhby krovi Rossii). 2012; 1: 24–8. (in Russian)
16. Toropovskiy A., Tyumina O., Trusova L. Estimation of HLA alleles and haplotypes frequencies distribution in population of the Samara Region. 36th Annual Meeting Abstracts. Human Immunol. 2010; 71 (Suppl. 1): S84.
17. Russian Ministry of Health (2002). HLA in Russian Northwest. In: The Allele Frequency Database Net. Available at: http://www.allelefrequencies.net.
18. Boldyreva M, Alexeev P, Khaitov R. (2005). HLA-genetic diversity among populations of Russia and FSU. I. Russians. In: The Allele Frequency Database Net. Available at: http://www.allelefrequencies.net.
Review
For citations:
Loginova M.A., Paramonov I.V., Tataeva Z.M., Kabardieva A.I. A new HLA-A allele, A*24:314, identified in the populations of the North Caucasus. Russian journal of hematology and transfusiology. 2016;61(2):96-100. (In Russ.) https://doi.org/10.18821/0234-5730-2016-61-2-96-100